Import various modules that we need for this notebook.
%pylab inline
import copy
import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
from keras.datasets import mnist, cifar10
from keras.models import Sequential, Graph
from keras.layers.core import Dense, Dropout, Activation, Flatten, Reshape
from keras.optimizers import SGD, RMSprop
from keras.utils import np_utils
from keras.regularizers import l2
from keras.layers.convolutional import Convolution2D, MaxPooling2D, ZeroPadding2D, AveragePooling2D
from keras.callbacks import EarlyStopping
from keras.preprocessing.image import ImageDataGenerator
from keras.layers.normalization import BatchNormalization
from PIL import Image
Load the MNIST dataset, flatten the images, convert the class labels, and scale the data.
(X_train, y_train), (X_test, y_test) = mnist.load_data()
X_train = X_train.reshape(X_train.shape[0], 1, 28, 28).astype('float32') / 255
X_test = X_test.reshape(X_test.shape[0], 1, 28, 28).astype('float32') / 255
Y_train = np_utils.to_categorical(y_train, 10)
Y_test = np_utils.to_categorical(y_test, 10)
Here is my attempt to replicate the LeNet-5 model as closely as possibly the original paper: LeCun, Yann, Léon Bottou, Yoshua Bengio, and Patrick Haffner. "Gradient-based learning applied to document recognition." Proceedings of the IEEE 86, no. 11 (1998): 2278-2324.
As few modern neural network libraries allow for partially connected convolution layers, I've substituted this with a dropout layer. I've also replaced momentum with the Hessian approximation, and rescaled the learning rate schedule, though the proportional decay remains the same.
model = Sequential()
model.add(Convolution2D(6, 5, 5, border_mode='valid', input_shape = (1, 28, 28)))
model.add(MaxPooling2D(pool_size=(2, 2)))
model.add(Activation("sigmoid"))
model.add(Convolution2D(16, 5, 5, border_mode='valid'))
model.add(MaxPooling2D(pool_size=(2, 2)))
model.add(Activation("sigmoid"))
model.add(Dropout(0.5))
model.add(Convolution2D(120, 1, 1, border_mode='valid'))
model.add(Flatten())
model.add(Dense(84))
model.add(Activation("sigmoid"))
model.add(Dense(10))
model.add(Activation('softmax'))
l_rate = 1
sgd = SGD(lr=l_rate, mu=0.8)
model.compile(loss='categorical_crossentropy', optimizer=sgd)
model.fit(X_train, Y_train, batch_size=32, nb_epoch=2,
verbose=1, show_accuracy=True, validation_data=(X_test, Y_test))
sgd = SGD(lr=0.8 * l_rate, mu=0.8)
model.compile(loss='categorical_crossentropy', optimizer=sgd)
model.fit(X_train, Y_train, batch_size=32, nb_epoch=3,
verbose=1, show_accuracy=True, validation_data=(X_test, Y_test))
sgd = SGD(lr=0.4 * l_rate, mu=0.8)
model.compile(loss='categorical_crossentropy', optimizer=sgd)
model.fit(X_train, Y_train, batch_size=32, nb_epoch=3,
verbose=1, show_accuracy=True, validation_data=(X_test, Y_test))
sgd = SGD(lr=0.2 * l_rate, mu=0.8)
model.compile(loss='categorical_crossentropy', optimizer=sgd)
model.fit(X_train, Y_train, batch_size=32, nb_epoch=4,
verbose=1, show_accuracy=True, validation_data=(X_test, Y_test))
sgd = SGD(lr=0.08 * l_rate, mu=0.8)
model.compile(loss='categorical_crossentropy', optimizer=sgd)
model.fit(X_train, Y_train, batch_size=32, nb_epoch=8,
verbose=1, show_accuracy=True, validation_data=(X_test, Y_test))
print("Test classification rate %0.05f" % model.evaluate(X_test, Y_test, show_accuracy=True)[1])
And once again, let's look at the misclassified examples.
y_hat = model.predict_classes(X_test)
test_wrong = [im for im in zip(X_test,y_hat,y_test) if im[1] != im[2]]
plt.figure(figsize=(10, 10))
for ind, val in enumerate(test_wrong[:100]):
plt.subplots_adjust(left=0, right=1, bottom=0, top=1)
plt.subplot(10, 10, ind + 1)
im = 1 - val[0].reshape((28,28))
plt.axis("off")
plt.text(0, 0, val[2], fontsize=14, color='blue')
plt.text(8, 0, val[1], fontsize=14, color='red')
plt.imshow(im, cmap='gray')
The LeNet paper also introduced the idea of adding tweaks to the input data set in order to artificially increase the trainin set size. They suggested slightly distorting the image by shifting or stretching the pixels. The idea is that these distortions should not change the output image classification. Keras has a pre-built library for doing this; let us try to use it here to improve the classification rate. Note that we do not want to flip the image, as this would change the meaning of some digits (6 & 9, for example). Minor rotations are okay, however.
# this will do preprocessing and realtime data augmentation
datagen = ImageDataGenerator(
featurewise_center=False, # set input mean to 0 over the dataset
samplewise_center=False, # set each sample mean to 0
featurewise_std_normalization=False, # divide inputs by std of the dataset
samplewise_std_normalization=False, # divide each input by its std
zca_whitening=False, # apply ZCA whitening
rotation_range=25, # randomly rotate images in the range (degrees, 0 to 180)
width_shift_range=0.1, # randomly shift images horizontally (fraction of total width)
height_shift_range=0.1, # randomly shift images vertically (fraction of total height)
horizontal_flip=False, # randomly flip images
vertical_flip=False) # randomly flip images
datagen.fit(X_train)
We'll use the same adaptation of LeNet-5 architecture.
model = Sequential()
model.add(Convolution2D(6, 5, 5, border_mode='valid', input_shape = (1, 28, 28)))
model.add(MaxPooling2D(pool_size=(2, 2)))
model.add(Activation("sigmoid"))
model.add(Convolution2D(16, 5, 5, border_mode='valid'))
model.add(MaxPooling2D(pool_size=(2, 2)))
model.add(Activation("sigmoid"))
model.add(Dropout(0.5))
model.add(Convolution2D(120, 1, 1, border_mode='valid'))
model.add(Flatten())
model.add(Dense(84))
model.add(Activation("sigmoid"))
model.add(Dense(10))
model.add(Activation('softmax'))
Now we'll fit the model. Notice that the format for this is slightly different as the data is coming from datagen.flow
rather than a single numpy array. We set the number of sample per epoch to be the same as before (60k). I am also using the non-augmented version with RMS prop for the first 2 epochs, as the details are not specified in the paper and this seems to greatly improve the convergence.
model.compile(loss='categorical_crossentropy', optimizer=RMSprop())
model.fit(X_train, Y_train, batch_size=32, nb_epoch=25,
verbose=1, show_accuracy=True, validation_data=(X_test, Y_test))
How does the performance stack up? Not quite as good as the non-distorted version, though notice how the classifier does not overfit the same was as it would without the data augmentation. I have a hunch that there is something non-optimal about the RMSprop implementation when using data augmentation.
At any rate, the true advantage of data augmentation comes when we have large models (regularization) or more complex learning tasks (generalization).
print("Test classification rate %0.05f" % model.evaluate(X_test, Y_test, show_accuracy=True)[1])
An adaptation of the 'fast' model from AlexNet applied to MNIST-10.
model = Sequential()
# Layer 1
model.add(Convolution2D(96, 11, 11, input_shape = (1,28,28), border_mode='same'))
model.add(Activation('relu'))
model.add(MaxPooling2D(pool_size=(2, 2)))
# Layer 2
model.add(Convolution2D(256, 5, 5, border_mode='same'))
model.add(Activation('relu'))
model.add(MaxPooling2D(pool_size=(2, 2)))
# Layer 3
model.add(ZeroPadding2D((1,1)))
model.add(Convolution2D(512, 3, 3, border_mode='same'))
model.add(Activation('relu'))
# Layer 4
model.add(ZeroPadding2D((1,1)))
model.add(Convolution2D(1024, 3, 3, border_mode='same'))
model.add(Activation('relu'))
# Layer 5
model.add(ZeroPadding2D((1,1)))
model.add(Convolution2D(1024, 3, 3, border_mode='same'))
model.add(Activation('relu'))
model.add(MaxPooling2D(pool_size=(2, 2)))
# Layer 6
model.add(Flatten())
model.add(Dense(3072, init='glorot_normal'))
model.add(Activation('relu'))
model.add(Dropout(0.5))
# Layer 7
model.add(Dense(4096, init='glorot_normal'))
model.add(Activation('relu'))
model.add(Dropout(0.5))
# Layer 8
model.add(Dense(10, init='glorot_normal'))
model.add(Activation('softmax'))
As you can imagine, training this model (even on MNIST-10) is quite time consuming. I'll run just one Epoch with 10 samples to show how it works.
model.compile(loss='categorical_crossentropy', optimizer=RMSprop())
model.fit(X_train[:10], Y_train[:10], batch_size=1, nb_epoch=1,
verbose=1, show_accuracy=True)
The true power of this model really comes out when it is used on a larger corpus of images, such as ILSVRC and MS COCO, with images having a larger spatial size.
Now, let's load the VGG-19 model using pre-trained weights. First, we'll create a keras model as normal:
model = Sequential()
model.add(ZeroPadding2D((1,1),input_shape=(3,224,224)))
model.add(Convolution2D(64, 3, 3, activation='relu'))
model.add(ZeroPadding2D((1,1)))
model.add(Convolution2D(64, 3, 3, activation='relu'))
model.add(MaxPooling2D((2,2), strides=(2,2)))
model.add(ZeroPadding2D((1,1)))
model.add(Convolution2D(128, 3, 3, activation='relu'))
model.add(ZeroPadding2D((1,1)))
model.add(Convolution2D(128, 3, 3, activation='relu'))
model.add(MaxPooling2D((2,2), strides=(2,2)))
model.add(ZeroPadding2D((1,1)))
model.add(Convolution2D(256, 3, 3, activation='relu'))
model.add(ZeroPadding2D((1,1)))
model.add(Convolution2D(256, 3, 3, activation='relu'))
model.add(ZeroPadding2D((1,1)))
model.add(Convolution2D(256, 3, 3, activation='relu'))
model.add(ZeroPadding2D((1,1)))
model.add(Convolution2D(256, 3, 3, activation='relu'))
model.add(MaxPooling2D((2,2), strides=(2,2)))
model.add(ZeroPadding2D((1,1)))
model.add(Convolution2D(512, 3, 3, activation='relu'))
model.add(ZeroPadding2D((1,1)))
model.add(Convolution2D(512, 3, 3, activation='relu'))
model.add(ZeroPadding2D((1,1)))
model.add(Convolution2D(512, 3, 3, activation='relu'))
model.add(ZeroPadding2D((1,1)))
model.add(Convolution2D(512, 3, 3, activation='relu'))
model.add(MaxPooling2D((2,2), strides=(2,2)))
model.add(ZeroPadding2D((1,1)))
model.add(Convolution2D(512, 3, 3, activation='relu'))
model.add(ZeroPadding2D((1,1)))
model.add(Convolution2D(512, 3, 3, activation='relu'))
model.add(ZeroPadding2D((1,1)))
model.add(Convolution2D(512, 3, 3, activation='relu'))
model.add(ZeroPadding2D((1,1)))
model.add(Convolution2D(512, 3, 3, activation='relu'))
model.add(MaxPooling2D((2,2), strides=(2,2)))
model.add(Flatten())
model.add(Dense(4096, activation='relu'))
model.add(Dropout(0.5))
model.add(Dense(4096, activation='relu'))
model.add(Dropout(0.5))
model.add(Dense(1000, activation='softmax'))
We then load the weights of the model from a file (you can download this from the course website; it is not small, coming in at about half a gigabyte). We then have to compile the model, even though we have no intention of actually training it. This is because the compilation in part sets the forward propigation code, which we will need to do predictions.
model.load_weights("../../../class_data/keras/vgg19_weights.h5")
sgd = SGD(lr=0.1, decay=1e-6, momentum=0.9, nesterov=True)
model.compile(optimizer=sgd, loss='categorical_crossentropy')
We will also load some metadata, that gives class labels to the output:
synsets = []
with open("../../../class_data/keras/synset_words.txt", "r") as f:
synsets += f.readlines()
synsets = [x.replace("\n","") for x in synsets]
Now lets read in an image of a lion:
im = Image.open('img/lion.jpg').resize((224, 224), Image.ANTIALIAS)
plt.figure(figsize=(4, 4))
plt.axis("off")
plt.imshow(im)
im = np.array(im).astype(np.float32)
# scale the image, according to the format used in training
im[:,:,0] -= 103.939
im[:,:,1] -= 116.779
im[:,:,2] -= 123.68
im = im.transpose((2,0,1))
im = np.expand_dims(im, axis=0)
And now predict the class label from the VGG-19 model:
out = model.predict(im)
for index in np.argsort(out)[0][::-1][:10]:
print("%01.4f - %s" % (out[0][index], synsets[index].replace("\n","")))
A relatively impressive result for an out of sample image!
An implementation of the Inception module, the basic building block of GoogLeNet (2014). As with OverFeat, I don't have enough compute power here to actually traing the model, but this does serve as a nice example of how to use the graph interface in keras.
model = Graph()
model.add_input(name='n00', input_shape=(1,28,28))
# layer 1
model.add_node(Convolution2D(64,1,1, activation='relu'), name='n11', input='n00')
model.add_node(Flatten(), name='n11_f', input='n11')
model.add_node(Convolution2D(96,1,1, activation='relu'), name='n12', input='n00')
model.add_node(Convolution2D(16,1,1, activation='relu'), name='n13', input='n00')
model.add_node(MaxPooling2D((3,3),strides=(2,2)), name='n14', input='n00')
# layer 2
model.add_node(Convolution2D(128,3,3, activation='relu'), name='n22', input='n12')
model.add_node(Flatten(), name='n22_f', input='n22')
model.add_node(Convolution2D(32,5,5, activation='relu'), name='n23', input='n13')
model.add_node(Flatten(), name='n23_f', input='n23')
model.add_node(Convolution2D(32,1,1, activation='relu'), name='n24', input='n14')
model.add_node(Flatten(), name='n24_f', input='n24')
# output layer
model.add_node(Dense(1024, activation='relu'), name='layer4',
inputs=['n11_f', 'n22_f', 'n23_f', 'n24_f'], merge_mode='concat')
model.add_node(Dense(10, activation='softmax'), name='layer5', input='layer4')
model.add_output(name='output1',input='layer5')
model.compile(loss={'output1':'categorical_crossentropy'}, optimizer=RMSprop())
model.fit({'n00':X_train[:100], 'output1':Y_train[:100]}, nb_epoch=1, verbose=1)
Use the Batch Normalization of: Ioffe, Sergey, and Christian Szegedy. "Batch normalization: Accelerating deep network training by reducing internal covariate shift." arXiv preprint arXiv:1502.03167 (2015). We'll re-train LeNet-5, but use relu units.
model = Sequential()
model.add(Convolution2D(6, 5, 5, border_mode='valid', input_shape = (1, 28, 28)))
model.add(MaxPooling2D(pool_size=(2, 2)))
model.add(BatchNormalization())
model.add(Activation("relu"))
model.add(Convolution2D(16, 5, 5, border_mode='valid'))
model.add(MaxPooling2D(pool_size=(2, 2)))
model.add(BatchNormalization())
model.add(Activation("relu"))
model.add(Convolution2D(120, 1, 1, border_mode='valid'))
model.add(Flatten())
model.add(Dense(84))
model.add(Activation("relu"))
model.add(Dense(10))
model.add(Activation('softmax'))
model.compile(loss='categorical_crossentropy', optimizer=RMSprop())
model.fit(X_train, Y_train, batch_size=32, nb_epoch=8,
verbose=1, show_accuracy=True, validation_data=(X_test, Y_test))
An example of the residual block used in the pre-print: "Deep Residual Learning for Image Recognition." (2015).
model = Graph()
model.add_input(name='input0', input_shape=(1,28,28))
model.add_node(Flatten(), name='input1', input='input0')
model.add_node(Dense(50), name='input2', input='input1')
model.add_node(Dense(50, activation='relu'), name='middle1', input='input2')
model.add_node(Dense(50, activation='relu'), name='middle2', input='middle1')
model.add_node(Dense(512, activation='relu'), name='top1',
inputs=['input2', 'middle2'], merge_mode='sum')
model.add_node(Dense(10, activation='softmax'), name='top2', input='top1')
model.add_output(name='top3',input='top2')
model.compile(loss={'top3':'categorical_crossentropy'}, optimizer=RMSprop())
model.fit({'input0':X_train, 'top3':Y_train}, nb_epoch=25, verbose=1,
validation_data={'input0':X_test, 'top3':Y_test})
For reference, here is the architecture of a Pure Convolution network: Springenberg, J. T., Dosovitskiy, A., Brox, T., & Riedmiller, M. (2014). Striving for simplicity: The all convolutional net. arXiv preprint arXiv:1412.6806.
model = Sequential()
model.add(Convolution2D(96, 5, 5, border_mode='valid', input_shape = (1, 28, 28)))
model.add(MaxPooling2D(pool_size=(3, 3), strides=(2,2)))
model.add(Activation("relu"))
model.add(Convolution2D(192, 5, 5, border_mode='valid'))
model.add(MaxPooling2D(pool_size=(3, 3), strides=(2,2)))
model.add(Activation("relu"))
model.add(Convolution2D(192, 3, 3, border_mode='valid'))
model.add(Activation("relu"))
model.add(Convolution2D(192, 1, 1, border_mode='valid'))
model.add(Activation("relu"))
model.add(Convolution2D(10, 1, 1, border_mode='valid'))
model.add(Activation("relu"))
model.add(Flatten())
model.add(Activation('softmax'))
rms = RMSprop()
model.compile(loss='categorical_crossentropy', optimizer=rms)